PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015881319.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family HSF
Protein Properties Length: 439aa    MW: 50414.2 Da    PI: 5.5547
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015881319.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.65.5e-35141042101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+ye++++++ ++++sws++g sfvv++++efak++Lp yFkh+nf+SFvRQLn+YgF+k++ ++         weF++++F +g+++ll++
  XP_015881319.1  14 FLSKTYELVDEASSDSVVSWSQSGCSFVVWNPTEFAKDLLPMYFKHNNFSSFVRQLNTYGFRKIDPDQ---------WEFANEEFIRGQRHLLKN 99 
                     9****************************************************************999.........****************** PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     i+r+k
  XP_015881319.1 100 IHRRK 104
                     ***98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.13E-3410103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.8E-6110103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.6E-3711103IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.8E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.3E-3014103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MDGSHGSSTA PAPFLSKTYE LVDEASSDSV VSWSQSGCSF VVWNPTEFAK DLLPMYFKHN  60
NFSSFVRQLN TYGFRKIDPD QWEFANEEFI RGQRHLLKNI HRRKPIHSHS VPNQGNSSAS  120
LTEAEKQEYE KEIKRLKHDK RLLQLDLEKH ARDNQEFEYQ IQSLRNRFQS LEHRQKQLMI  180
FVAEHLQNPE FASVLIHQSE IHNKRRKLKS NHISDESNLE ENWNLNLQKE NQDAVSACML  240
KIEKVEKLQS SIEYWEELMC EVCSDIGQEV IDTCLLPQTS PTASEVQDPE IHEGHCSPRS  300
HISSPNSFDV HSSPEMLAGS SNHTDSPIMV SIFTNVNIQK KSPNIDMNTK PVGVPEVEAF  360
ETKVVRTKGG SPTKVNDLFW EQCLTEIPGS SNIQEDQSER RDMDSEVNDG EGTIQRNLWW  420
NMNNVEKLTQ QIGHLTPAM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-26310319129Heat shock factor protein 1
5d5v_B2e-26310319129Heat shock factor protein 1
5d5v_D2e-26310319129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015881318.10.0PREDICTED: heat stress transcription factor A-4c-like
RefseqXP_015881319.10.0PREDICTED: heat stress transcription factor A-4c-like
RefseqXP_015881320.10.0PREDICTED: heat stress transcription factor A-4c-like
RefseqXP_015881322.10.0PREDICTED: heat stress transcription factor A-4c-like
TrEMBLD9ZJ271e-170D9ZJ27_MALDO; HSF domain class transcription factor
STRINGPOPTR_0014s13780.11e-128(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.12e-81HSF family protein